Get the berger hole and lining up your arrow with it out of your head, those holes are for mounting your rest and nothing else. What is important is setting up your rest so it has full range of motion without hitting the shelf, then put the rest in the center of the shelf where you wish it would end up having awesome arrow flight.
Now start shooting through paper and see what the tears do as you move the d-loop up and down on the string, amazingly the tears will improve left to right and up and down on many bows and there will be one location where the tear is the best. It won't be perfect but it will be better than other locations, this is what I call the sweetspot.
Now you can use yolk tuning or moving the rest a little left or right to finish the job and get the perfect bullet holes at every distance and have your awesome arrowflight. This is why I can tune any arrow spine to shoot out of any bow because I adress the d-loop and the rest, most people just tie on the d-loop and if they are lucky they put it in a acceptable spot and they get a easy tuning session but sometimes they put it in a spot that causes them many hours of frustration and they are the guys who believe spine must be perfectly picked by a chart or ontarget programs.